dbCAN-seq: a database of CAZyme sequence and annotation

Gene clsuter ID: MGYG000000553_3|CGC2
Gene ID: MGYG000000553_00584
Location and strand information: 99449 - 101095 (-)
Family: 3.2.1.55|GH43_12|GH43
Protein type: CAZyme
Protein description: Non-reducing end alpha-L-arabinofuranosidase BoGH43A
Protein isoelectric point: 8.35
Protein molecular weight: 61125.08
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000000553_3|CGC2
Gene ID: MGYG000000553_00585
Location and strand information: 101221 - 105306 (-)
Family: HTH_AraC+HTH_AraC
Protein type: TF
Protein description: Sensor histidine kinase RcsC

Gene clsuter ID: MGYG000000553_3|CGC2
Gene ID: MGYG000000553_00586
Location and strand information: 105929 - 107377 (+)
Family: GH5_21
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 8.0106
Protein molecular weight: 54888.09
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000000553_3|CGC2
Gene ID: MGYG000000553_00587
Location and strand information: 107497 - 110631 (+)
Family: 1.B.14.6.1
Protein type: TC
Protein description: hypothetical protein

Gene clsuter ID: MGYG000000553_3|CGC2
Gene ID: MGYG000000553_00588
Location and strand information: 110646 - 112547 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000000553_3|CGC2
Gene ID: MGYG000000553_00589
Location and strand information: 112565 - 115369 (+)
Family: 1.B.14.6.1
Protein type: TC
Protein description: hypothetical protein

Gene clsuter ID: MGYG000000553_3|CGC2
Gene ID: MGYG000000553_00590
Location and strand information: 115383 - 117158 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000000553_3|CGC2
Gene ID: MGYG000000553_00591
Location and strand information: 117192 - 118313 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000000553_3|CGC2
Gene ID: MGYG000000553_00592
Location and strand information: 118329 - 120563 (+)
Family: GH10
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 4.6641
Protein molecular weight: 83107.01
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Protein ID	eCAMI subfam	CAZyme substrate
MGYG000000553_00584	GH43_e50\|3.2.1.55	xylan
MGYG000000553_00586
MGYG000000553_00592	GH10_e9\|3.2.1.8	xylan

You are here: cgc-> ?help

CGC gene composition diagram

Gene composition table

Substrate predicted by eCAMI subfamilies is xylan

Substrate predicted by dbCAN-PUL is xylan download this fig

Genomic location

Protein ID	Protein Name	Type	Start	End	Strand	Signature
MGYG000000553_00584	Non-reducing end alpha-L-arabinofuranosidase BoGH43A	CAZyme	99449	101095	-	3.2.1.55\| GH43_12\| GH43
MGYG000000553_00585	Sensor histidine kinase RcsC	TF	101221	105306	-	HTH_AraC+HTH_AraC
MGYG000000553_00586	hypothetical protein	CAZyme	105929	107377	+	GH5_21
MGYG000000553_00587	hypothetical protein	TC	107497	110631	+	1.B.14.6.1
MGYG000000553_00588	hypothetical protein	null	110646	112547	+	SusD-like_3\| SusD_RagB
MGYG000000553_00589	hypothetical protein	TC	112565	115369	+	1.B.14.6.1
MGYG000000553_00590	hypothetical protein	null	115383	117158	+	SusD-like_3\| SusD_RagB
MGYG000000553_00591	hypothetical protein	null	117192	118313	+	DUF1735\| DUF5627
MGYG000000553_00592	hypothetical protein	CAZyme	118329	120563	+	GH10
Protein ID	Protein Name	Type	Start	End	Strand	Signature